Variant report

Variant	rs17056295
Chromosome Location	chr9:73728358-73728359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512011	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056169	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17056184	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056185	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056215	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4338175	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56287878	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59612871	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60222070	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647946	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647947	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859140	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17056295	SCGB2A2	trans	brain	seeQTL
rs17056295	SCGB1D2	trans	brain	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73720400-73735200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73726400-73728600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:73727000-73730200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73727400-73728400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:73727600-73728400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:73727600-73728400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:73727600-73728600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:73727800-73728400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:73727800-73728400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:73728000-73728400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73728000-73736000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:73728200-73730000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:73728200-73730000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:73728200-73730600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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