Variant report

Variant	rs17059488
Chromosome Location	chr6:131064296-131064297
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57936989	1.00[AFR][1000 genomes]
rs58234734	0.85[AFR][1000 genomes]
rs61224554	0.85[AFR][1000 genomes]
rs61591453	1.00[AFR][1000 genomes]
rs6914486	0.82[AFR][1000 genomes]
rs73772392	0.85[AFR][1000 genomes]
rs73772394	0.89[AFR][1000 genomes]
rs73772400	1.00[AFR][1000 genomes]
rs73774118	1.00[AFR][1000 genomes]
rs7740130	1.00[AFR][1000 genomes]
rs7740434	1.00[AFR][1000 genomes]
rs9492702	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131059000-131065800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131063400-131064800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:131063600-131064400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:131063600-131064400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:131063800-131064400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:131063800-131065800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:131063800-131066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:131064000-131064400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:131064000-131064800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:131064000-131064800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:131064200-131064400	Enhancers	NHDF-Ad	bronchial
12	chr6:131064200-131064600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:131064200-131064800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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