Variant report

Variant	rs73772392
Chromosome Location	chr6:131034486-131034487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17059488	0.85[AFR][1000 genomes]
rs57936989	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58234734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61224554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61591453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772400	0.85[AFR][1000 genomes]
rs73774118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740130	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740434	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029800-131034600	Weak transcription	Fetal Stomach	stomach
2	chr6:131029800-131035000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:131030000-131037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:131032000-131035600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:131032200-131035400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:131032200-131035800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:131032400-131035200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:131032800-131035200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:131032800-131035400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:131033200-131036800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:131033400-131035200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:131033600-131035600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:131034000-131035400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:131034000-131035400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:131034200-131034600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:131034200-131034600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:131034200-131034600	Enhancers	Brain Germinal Matrix	brain
18	chr6:131034200-131034800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:131034200-131034800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr6:131034200-131034800	Enhancers	Fetal Kidney	kidney
21	chr6:131034200-131035200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:131034200-131035400	Enhancers	Fetal Brain Male	brain
23	chr6:131034400-131034600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:131034400-131034600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:131034400-131034800	Flanking Active TSS	Fetal Brain Female	brain
26	chr6:131034400-131034800	Enhancers	Fetal Muscle Leg	muscle
27	chr6:131034400-131035000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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