Variant report

Variant	rs58234734
Chromosome Location	chr6:131025438-131025439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17059488	0.85[AFR][1000 genomes]
rs57936989	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61224554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61591453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772400	0.85[AFR][1000 genomes]
rs73774118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740130	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740434	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131018400-131029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:131023600-131029000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:131023800-131027600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:131023800-131029200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:131023800-131029200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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