Variant report

Variant	rs57936989
Chromosome Location	chr6:131076695-131076696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17059488	1.00[AFR][1000 genomes]
rs58234734	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61224554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61591453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6914486	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772392	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772394	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772400	1.00[AFR][1000 genomes]
rs73774118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131075200-131076800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131075400-131076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:131076400-131076800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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