Variant report

Variant	rs17060521
Chromosome Location	chr4:175410435-175410436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175406770..175409380-chr4:175409383..175411146,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11726385	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11728322	0.80[ASN][1000 genomes]
rs13106936	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118007	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13126570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127058	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13132442	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13132689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17052159	0.80[ASN][1000 genomes]
rs17052161	0.80[ASN][1000 genomes]
rs17052168	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17060554	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2195039	0.80[ASN][1000 genomes]
rs2303520	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2332898	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34299544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34939184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35223598	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35549890	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35780342	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35906694	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4147100	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs45444797	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs45556037	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59300323	0.80[ASN][1000 genomes]
rs62337142	0.80[ASN][1000 genomes]
rs62337145	0.82[ASN][1000 genomes]
rs62337147	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337155	0.90[ASN][1000 genomes]
rs62337158	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62338684	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827776	0.82[ASN][1000 genomes]
rs7665165	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7682749	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7691789	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9312555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881299	chr4:175403673-175415442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175406800-175412800	Weak transcription	Liver	Liver
3	chr4:175406800-175412800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:175406800-175415200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:175406800-175415800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175407000-175410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175407000-175415000	Weak transcription	Primary T cells from cord blood	blood
8	chr4:175408200-175411600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:175409200-175415000	Weak transcription	Fetal Thymus	thymus
10	chr4:175409400-175424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:175410000-175424600	Weak transcription	Fetal Stomach	stomach
12	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:175410400-175411200	Genic enhancers	A549	lung
14	chr4:175410400-175412600	Enhancers	Hela-S3	cervix
15	chr4:175410400-175418000	Weak transcription	Rectal Smooth Muscle	rectum

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