Variant report

Variant	rs59300323
Chromosome Location	chr4:175386055-175386056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175385505..175387485-chr4:175568207..175570960,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11726385	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11728322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735634	0.89[AFR][1000 genomes]
rs13106936	0.80[ASN][1000 genomes]
rs13126570	0.80[ASN][1000 genomes]
rs13127058	0.80[ASN][1000 genomes]
rs13132442	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13135838	0.86[AFR][1000 genomes]
rs1426936	0.95[ASN][1000 genomes]
rs17052159	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052161	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052168	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17060521	0.80[ASN][1000 genomes]
rs2195039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332896	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2332898	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34299544	0.80[ASN][1000 genomes]
rs34939184	0.80[ASN][1000 genomes]
rs35223598	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35549890	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35780342	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35906694	0.82[ASN][1000 genomes]
rs36112171	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4147100	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5012181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62337115	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62337116	0.82[EUR][1000 genomes]
rs62337142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62337143	0.95[ASN][1000 genomes]
rs62337145	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62337147	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337155	0.90[ASN][1000 genomes]
rs6827776	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666264	0.86[AFR][1000 genomes]
rs7682749	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9312555	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175383600-175388200	Weak transcription	Muscle Satellite Cultured Cells	--

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