Variant report

Variant	rs11735634
Chromosome Location	chr4:175343110-175343111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:175342913-175343157	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:175341767..175344655-chr4:175574343..175576640,2	K562	blood:
2	chr4:175340964..175343698-chr4:175354829..175357368,2	K562	blood:
3	chr4:175342786..175344647-chr4:175348562..175350171,2	K562	blood:

Variant related genes	Relation type
MIR4276	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11726385	0.82[AFR][1000 genomes]
rs11728322	0.96[AFR][1000 genomes]
rs13102962	0.82[AFR][1000 genomes]
rs13135838	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17052159	0.96[AFR][1000 genomes]
rs17052161	0.89[AFR][1000 genomes]
rs2195039	0.96[AFR][1000 genomes]
rs2332898	0.82[AFR][1000 genomes]
rs34674779	0.89[AFR][1000 genomes]
rs35539859	0.89[AFR][1000 genomes]
rs35697391	0.82[AFR][1000 genomes]
rs35706347	0.89[AFR][1000 genomes]
rs35780342	0.82[AFR][1000 genomes]
rs35931018	0.89[AFR][1000 genomes]
rs36112171	0.93[AFR][1000 genomes]
rs5012181	0.96[AFR][1000 genomes]
rs59300323	0.89[AFR][1000 genomes]
rs62335856	0.82[AFR][1000 genomes]
rs62337115	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62337116	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62337142	0.96[AFR][1000 genomes]
rs62337147	0.82[AFR][1000 genomes]
rs6827776	0.89[AFR][1000 genomes]
rs7666264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672838	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175340200-175344200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:175340600-175343800	Weak transcription	Hela-S3	cervix
3	chr4:175340600-175345800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:175340600-175345800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:175340800-175344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:175340800-175344600	Weak transcription	Placenta	Placenta
7	chr4:175341800-175344200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:175341800-175344200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:175342000-175345400	Enhancers	Primary T cells from cord blood	blood
10	chr4:175342200-175343400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:175342200-175344000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:175342200-175344000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:175342200-175344000	Enhancers	K562	blood
14	chr4:175342200-175344800	Weak transcription	Fetal Thymus	thymus
15	chr4:175342800-175343600	Weak transcription	Primary B cells from cord blood	blood
16	chr4:175342800-175344000	Weak transcription	A549	lung
17	chr4:175342800-175345000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:175342800-175345200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:175343000-175344200	Weak transcription	Muscle Satellite Cultured Cells	--

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