Variant report

Variant	rs62337115
Chromosome Location	chr4:175360330-175360331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11728322	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11735634	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13135838	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052159	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17052161	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2195039	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2332896	0.85[EUR][1000 genomes]
rs34674779	0.86[AFR][1000 genomes]
rs35539859	0.86[AFR][1000 genomes]
rs35706347	0.86[AFR][1000 genomes]
rs35931018	0.86[AFR][1000 genomes]
rs36112171	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs5012181	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59300323	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62337116	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62337142	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62337145	0.82[EUR][1000 genomes]
rs6827776	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7666264	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175359000-175361000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:175359600-175367200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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