Variant report

Variant	rs7666264
Chromosome Location	chr4:175346738-175346739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11728322	0.93[AFR][1000 genomes]
rs11735634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13135838	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17052159	0.93[AFR][1000 genomes]
rs17052161	0.86[AFR][1000 genomes]
rs2195039	0.93[AFR][1000 genomes]
rs34674779	0.86[AFR][1000 genomes]
rs35539859	0.86[AFR][1000 genomes]
rs35706347	0.86[AFR][1000 genomes]
rs35931018	0.86[AFR][1000 genomes]
rs36112171	0.96[AFR][1000 genomes]
rs5012181	0.93[AFR][1000 genomes]
rs59300323	0.86[AFR][1000 genomes]
rs62337115	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62337116	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62337142	0.93[AFR][1000 genomes]
rs6827776	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175344800-175348600	Weak transcription	NHEK	skin
2	chr4:175345000-175347000	Weak transcription	A549	lung
3	chr4:175345200-175348600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:175345200-175348600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:175345200-175348600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:175345200-175348600	Weak transcription	Placenta	Placenta
7	chr4:175345200-175348800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:175345200-175350600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:175345400-175350200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:175345800-175349200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:175345800-175349800	Weak transcription	HMEC	breast
12	chr4:175345800-175350400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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