Variant report

Variant	rs36112171
Chromosome Location	chr4:175368557-175368558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11726385	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11728322	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11735634	0.93[AFR][1000 genomes]
rs13135838	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1426936	0.92[ASN][1000 genomes]
rs17052159	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17052161	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17052168	0.87[ASN][1000 genomes]
rs2195039	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332896	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332898	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34674779	0.83[AFR][1000 genomes]
rs35539859	0.83[AFR][1000 genomes]
rs35549890	0.87[ASN][1000 genomes]
rs35706347	0.83[AFR][1000 genomes]
rs35780342	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35931018	0.83[AFR][1000 genomes]
rs4147100	0.87[ASN][1000 genomes]
rs5012181	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59300323	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62337115	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62337116	0.87[EUR][1000 genomes]
rs62337142	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62337143	0.92[ASN][1000 genomes]
rs62337145	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62337147	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62337155	0.87[ASN][1000 genomes]
rs6827776	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7666264	0.96[AFR][1000 genomes]
rs7682749	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175356000-175370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175367600-175368800	Enhancers	Stomach Mucosa	stomach
3	chr4:175368000-175368600	Enhancers	A549	lung
4	chr4:175368400-175369400	Weak transcription	Colon Smooth Muscle	Colon

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