Variant report

Variant	rs17063522
Chromosome Location	chr6:134537747-134537748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134494576..134496856-chr6:134537015..134539253,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1626488	1.00[ASN][1000 genomes]
rs17063538	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1763499	1.00[JPT][hapmap]
rs58598912	0.92[ASN][1000 genomes]
rs60742092	0.92[ASN][1000 genomes]
rs73560862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73560865	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73562927	0.92[ASN][1000 genomes]
rs9321431	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9483664	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493858	1.00[JPT][hapmap]
rs9493867	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493868	0.92[ASN][1000 genomes]
rs9493870	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9493871	1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:134519400-134538200	Weak transcription	Ovary	ovary
3	chr6:134525200-134538000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:134532800-134551200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:134535800-134539400	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:134536400-134539600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:134536400-134551600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:134536800-134537800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:134536800-134538400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:134537200-134538400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:134537200-134538800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:134537400-134538000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:134537400-134538200	Enhancers	Brain Anterior Caudate	brain
14	chr6:134537400-134538200	Flanking Active TSS	K562	blood
15	chr6:134537400-134538400	Enhancers	Brain Hippocampus Middle	brain
16	chr6:134537400-134538400	Enhancers	GM12878-XiMat	blood
17	chr6:134537400-134538800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:134537400-134539400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:134537600-134538000	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr6:134537600-134538200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:134537600-134538400	Enhancers	HepG2	liver
22	chr6:134537600-134538600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:134537600-134538800	Enhancers	Brain Substantia Nigra	brain
24	chr6:134537600-134539400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:134537600-134539400	Enhancers	NHDF-Ad	bronchial

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