Variant report

Variant	rs9493868
Chromosome Location	chr6:134555780-134555781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626488	0.92[ASN][1000 genomes]
rs17063522	0.92[ASN][1000 genomes]
rs17063538	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58598912	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60742092	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73560862	0.92[ASN][1000 genomes]
rs73560865	0.92[ASN][1000 genomes]
rs73562927	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321431	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483664	0.92[ASN][1000 genomes]
rs9493867	0.92[ASN][1000 genomes]
rs9493870	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493871	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv441702	chr6:134550755-134557203	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv521411	chr6:134554338-134557389	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv523127	chr6:134554338-134557389	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134547800-134557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:134551000-134564000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:134551400-134558800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:134551400-134559600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:134551400-134560200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:134551600-134561600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:134551800-134556800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:134551800-134556800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:134551800-134556800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:134551800-134556800	Weak transcription	HUVEC	blood vessel
11	chr6:134552000-134557000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:134552200-134558600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:134552400-134556200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:134552400-134556200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:134552400-134557400	Weak transcription	Primary T cells from cord blood	blood
16	chr6:134552400-134557400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:134552600-134556200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:134552600-134556200	Weak transcription	GM12878-XiMat	blood
19	chr6:134553800-134558200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:134554600-134556600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:134554800-134557200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:134554800-134559200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:134554800-134559200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:134555000-134556000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:134555000-134557200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:134555600-134556200	Weak transcription	Brain Hippocampus Middle	brain

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