Variant report

Variant	rs73560865
Chromosome Location	chr6:134533723-134533724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1626488	1.00[ASN][1000 genomes]
rs17063522	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17063538	0.92[ASN][1000 genomes]
rs58598912	0.92[ASN][1000 genomes]
rs60742092	0.92[ASN][1000 genomes]
rs73560862	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73560868	0.84[AFR][1000 genomes]
rs73562927	0.92[ASN][1000 genomes]
rs9321431	0.92[ASN][1000 genomes]
rs9483664	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9493858	0.88[AFR][1000 genomes]
rs9493867	1.00[ASN][1000 genomes]
rs9493868	0.92[ASN][1000 genomes]
rs9493870	0.92[ASN][1000 genomes]
rs9493871	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:134519400-134538200	Weak transcription	Ovary	ovary
3	chr6:134523400-134536600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:134525200-134538000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:134529000-134537600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:134531200-134537000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:134531600-134537400	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:134532400-134536600	Weak transcription	K562	blood
9	chr6:134532800-134551200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:134533000-134535800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:134533000-134537400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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