Variant report

Variant	rs60742092
Chromosome Location	chr6:134550654-134550655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1626488	0.92[ASN][1000 genomes]
rs17063522	0.92[ASN][1000 genomes]
rs17063538	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58598912	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73560862	0.92[ASN][1000 genomes]
rs73560865	0.92[ASN][1000 genomes]
rs73562927	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321431	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483664	0.92[ASN][1000 genomes]
rs9493867	0.92[ASN][1000 genomes]
rs9493868	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493870	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493871	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134532800-134551200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:134536400-134551600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:134545200-134551200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:134545600-134550800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:134545600-134550800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:134545800-134554600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:134547800-134557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:134549600-134551600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:134550200-134551000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:134550200-134551800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:134550400-134551000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:134550400-134551400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:134550400-134551600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:134550400-134552200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr6:134550600-134551200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:134550600-134551200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:134550600-134551200	Active TSS	Primary hematopoietic stem cells	blood
18	chr6:134550600-134551200	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:134550600-134551400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:134550600-134551400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:134550600-134551600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:134550600-134551600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:134550600-134551800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr6:134550600-134551800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:134550600-134552400	Enhancers	Primary B cells from peripheral blood	blood

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