Variant report

Variant	rs17068777
Chromosome Location	chr5:167012219-167012220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10475852	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs12515062	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12517217	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12518637	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs4869060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7727960	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:167007800-167014200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:167010200-167015000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:167010400-167015000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:167010800-167020400	Weak transcription	HSMM	muscle
6	chr5:167010800-167022200	Weak transcription	Fetal Lung	lung
7	chr5:167011600-167012800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167011600-167014600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:167011600-167014800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:167012000-167012400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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