Variant report

Variant	rs7727960
Chromosome Location	chr5:167006678-167006679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10462968	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12515062	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12517217	0.82[ASN][1000 genomes]
rs12518637	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17068777	0.96[ASN][1000 genomes]
rs4869060	0.92[ASN][1000 genomes]
rs9313384	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:167004200-167009600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:167004600-167007800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167005200-167006800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:167005200-167007400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167005400-167007200	Enhancers	NH-A	brain
7	chr5:167005400-167010200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:167006200-167010800	Enhancers	HSMM	muscle
9	chr5:167006400-167007200	Enhancers	Osteobl	bone
10	chr5:167006400-167007400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:167006600-167007000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:167006600-167007000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167006600-167007200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:167006600-167009800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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