Variant report

Variant	rs9313384
Chromosome Location	chr5:166987038-166987039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12517217	0.85[AMR][1000 genomes]
rs12518637	1.00[AMR][1000 genomes]
rs4869060	0.85[AMR][1000 genomes]
rs61475260	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7727960	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166977600-166988400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:166978000-166987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:166981800-166988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:166983200-166988200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:166987000-166989200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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