Variant report

Variant	rs4869060
Chromosome Location	chr5:167026545-167026546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10475852	0.83[CHB][hapmap]
rs12515062	1.00[CHB][hapmap]
rs12517217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12518637	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17068777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7727960	0.92[ASN][1000 genomes]
rs9313384	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167015200-167027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167019400-167036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167021000-167029000	Weak transcription	HSMMtube	muscle
4	chr5:167021200-167027600	Weak transcription	HSMM	muscle
5	chr5:167023000-167028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:167023200-167029800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167023400-167034000	Weak transcription	Fetal Lung	lung
8	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167024600-167026800	Enhancers	Fetal Brain Male	brain
10	chr5:167025000-167029200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167026200-167027600	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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