Variant report

Variant	rs12518637
Chromosome Location	chr5:167009033-167009034
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10475852	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap]
rs12515062	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs12517217	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17068777	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs4869060	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61475260	0.92[AMR][1000 genomes]
rs7727960	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9313384	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167003200-167014200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:167004200-167009600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:167005400-167010200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:167006200-167010800	Enhancers	HSMM	muscle
5	chr5:167006600-167009800	Weak transcription	Fetal Lung	lung
6	chr5:167007000-167009800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167007200-167009600	Weak transcription	Osteobl	bone
8	chr5:167007200-167009800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:167007400-167009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:167007800-167010000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167007800-167011400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:167007800-167014200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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