Variant report

Variant	rs17069929
Chromosome Location	chr6:140664849-140664850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12523675	0.84[EUR][1000 genomes]
rs17069896	0.90[EUR][1000 genomes]
rs17069919	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17069951	0.94[EUR][1000 genomes]
rs17069962	0.84[EUR][1000 genomes]
rs34350432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55989526	0.94[EUR][1000 genomes]
rs60510685	0.84[EUR][1000 genomes]
rs60519960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570397	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6570399	1.00[CEU][hapmap]
rs6901224	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6915302	0.94[EUR][1000 genomes]
rs6938047	0.94[EUR][1000 genomes]
rs73777320	0.84[EUR][1000 genomes]
rs7743754	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140660000-140670400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:140661600-140665000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140662200-140665400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:140662800-140665200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:140664200-140665400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:140664400-140669400	Enhancers	HUVEC	blood vessel
7	chr6:140664600-140665600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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