Variant report

Variant	rs60519960
Chromosome Location	chr6:140652520-140652521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12523675	0.84[EUR][1000 genomes]
rs17069896	0.90[EUR][1000 genomes]
rs17069919	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17069929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17069951	0.94[EUR][1000 genomes]
rs17069962	0.84[EUR][1000 genomes]
rs34350432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55989526	0.94[EUR][1000 genomes]
rs60510685	0.84[EUR][1000 genomes]
rs6570397	0.90[EUR][1000 genomes]
rs6901224	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6915302	0.94[EUR][1000 genomes]
rs6938047	0.94[EUR][1000 genomes]
rs73777320	0.84[EUR][1000 genomes]
rs7743754	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140641400-140658000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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