Variant report

Variant	rs60510685
Chromosome Location	chr6:140783022-140783023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12523675	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17069929	0.84[EUR][1000 genomes]
rs17069951	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17069962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17069974	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17070037	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1856759	0.87[AMR][1000 genomes]
rs34350432	0.84[EUR][1000 genomes]
rs55989526	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60481239	0.83[EUR][1000 genomes]
rs60519960	0.84[EUR][1000 genomes]
rs6570397	0.93[EUR][1000 genomes]
rs6570399	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6915302	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6938047	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73777320	0.87[EUR][1000 genomes]
rs955446	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1030409	chr6:140768423-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1034251	chr6:140771199-140819415	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1021271	chr6:140779526-140849815	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1018932	chr6:140779526-140863146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1021431	chr6:140779526-140865994	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2763973	chr6:140779538-140863146	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv519374	chr6:140780603-140849702	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604768	chr6:140780603-140856770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140774200-140783400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140779800-140784000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:140780600-140783200	Weak transcription	HSMMtube	muscle
4	chr6:140780800-140783200	Weak transcription	NHEK	skin
5	chr6:140781400-140783800	Enhancers	Liver	Liver
6	chr6:140782000-140783400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:140782400-140783600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140782400-140785200	Enhancers	NHLF	lung
9	chr6:140782400-140786000	Enhancers	NHDF-Ad	bronchial
10	chr6:140782600-140783200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:140782600-140784800	Enhancers	Adipose Nuclei	Adipose
12	chr6:140782800-140784800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:140783000-140783200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:140783000-140783200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:140783000-140784000	Weak transcription	Ovary	ovary
16	chr6:140783000-140784800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:140783000-140785200	Enhancers	Osteobl	bone
18	chr6:140783000-140786200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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