Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12523675	0.90[EUR][1000 genomes]
rs17069896	0.84[EUR][1000 genomes]
rs17069919	0.87[EUR][1000 genomes]
rs17069929	0.94[EUR][1000 genomes]
rs17069962	0.90[EUR][1000 genomes]
rs17069974	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17070037	0.81[EUR][1000 genomes]
rs1856759	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34350432	0.94[EUR][1000 genomes]
rs55989526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60510685	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60519960	0.94[EUR][1000 genomes]
rs6570397	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6570399	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs6901224	0.87[EUR][1000 genomes]
rs6915302	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938047	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777320	0.90[EUR][1000 genomes]
rs7743754	0.87[EUR][1000 genomes]
rs955446	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140706400-140727000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:140715400-140723000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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