Variant report

Variant	rs17071372
Chromosome Location	chr6:110599164-110599165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110586928..110589719-chr6:110596505..110599259,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11750973	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751592	1.00[CEU][hapmap]
rs11752726	0.81[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs11753218	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753379	0.92[EUR][1000 genomes]
rs11756892	0.87[EUR][1000 genomes]
rs11757487	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111403	0.81[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs17071335	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071340	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071348	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071350	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071363	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071377	1.00[EUR][1000 genomes]
rs17071379	0.95[EUR][1000 genomes]
rs17071380	0.97[EUR][1000 genomes]
rs17071382	0.97[EUR][1000 genomes]
rs17071389	0.97[EUR][1000 genomes]
rs17071391	0.97[EUR][1000 genomes]
rs17071401	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2334320	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2334324	0.97[EUR][1000 genomes]
rs2878175	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2878176	0.83[EUR][1000 genomes]
rs4516983	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55842731	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56241136	1.00[EUR][1000 genomes]
rs57228333	0.92[EUR][1000 genomes]
rs59987321	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910958	0.97[EUR][1000 genomes]
rs6931749	0.81[GIH][hapmap]
rs73763003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763004	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765680	0.87[EUR][1000 genomes]
rs73765683	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73765685	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765687	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765690	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765691	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73765692	0.89[EUR][1000 genomes]
rs7741277	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746806	0.90[EUR][1000 genomes]
rs7750037	0.81[GIH][hapmap];0.85[TSI][hapmap]
rs7754242	0.97[EUR][1000 genomes]
rs7756496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7758018	0.92[EUR][1000 genomes]
rs7758053	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770706	0.97[EUR][1000 genomes]
rs7771030	0.97[EUR][1000 genomes]
rs7771378	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7771574	0.97[EUR][1000 genomes]
rs7774900	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9481052	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9487340	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9487342	0.92[EUR][1000 genomes]
rs9487343	0.92[EUR][1000 genomes]
rs9487348	0.87[EUR][1000 genomes]
rs9689791	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
2	chr6:110567400-110604600	Weak transcription	Ovary	ovary
3	chr6:110567600-110604600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:110573600-110604600	Weak transcription	Aorta	Aorta
5	chr6:110586400-110601000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:110588400-110607200	Weak transcription	Fetal Stomach	stomach
7	chr6:110591200-110601000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:110592000-110604600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:110596200-110599400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:110596400-110604600	Weak transcription	Pancreas	Pancrea
11	chr6:110597800-110599200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:110597800-110599400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:110597800-110599600	Enhancers	Fetal Brain Male	brain
14	chr6:110598200-110599200	Weak transcription	Fetal Brain Female	brain
15	chr6:110598200-110599400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:110598400-110599200	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:110598600-110599200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:110598600-110604600	Weak transcription	Brain Anterior Caudate	brain
19	chr6:110599000-110599200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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