Variant report

Variant	rs2334324
Chromosome Location	chr6:110617709-110617710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11750973	0.97[EUR][1000 genomes]
rs11751592	1.00[CEU][hapmap]
rs11752726	0.92[TSI][hapmap]
rs11753218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs11753379	0.95[EUR][1000 genomes]
rs11756892	0.90[EUR][1000 genomes]
rs11757487	0.97[EUR][1000 genomes]
rs12111403	0.92[TSI][hapmap]
rs17071335	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs17071340	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs17071348	0.97[EUR][1000 genomes]
rs17071350	0.97[EUR][1000 genomes]
rs17071361	0.97[EUR][1000 genomes]
rs17071363	0.97[EUR][1000 genomes]
rs17071364	0.97[EUR][1000 genomes]
rs17071372	0.97[EUR][1000 genomes]
rs17071377	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17071379	0.92[EUR][1000 genomes]
rs17071380	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071382	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071389	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071391	1.00[EUR][1000 genomes]
rs17071401	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2334320	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs2334321	1.00[CHB][hapmap]
rs2878175	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2878176	0.85[EUR][1000 genomes]
rs4516983	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs55842731	0.97[EUR][1000 genomes]
rs56241136	0.97[EUR][1000 genomes]
rs57228333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59987321	0.97[EUR][1000 genomes]
rs6910958	1.00[EUR][1000 genomes]
rs6931749	0.86[TSI][hapmap]
rs73763003	0.97[EUR][1000 genomes]
rs73763004	0.97[EUR][1000 genomes]
rs73763005	0.97[EUR][1000 genomes]
rs73763006	0.97[EUR][1000 genomes]
rs73765680	0.90[EUR][1000 genomes]
rs73765683	0.95[EUR][1000 genomes]
rs73765685	0.97[EUR][1000 genomes]
rs73765687	0.97[EUR][1000 genomes]
rs73765690	0.97[EUR][1000 genomes]
rs73765691	0.97[EUR][1000 genomes]
rs73765692	0.86[EUR][1000 genomes]
rs7741277	0.97[EUR][1000 genomes]
rs7746806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7750037	0.92[TSI][hapmap]
rs7754242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756496	0.97[EUR][1000 genomes]
rs7756509	0.97[EUR][1000 genomes]
rs7758018	0.89[EUR][1000 genomes]
rs7758053	0.97[EUR][1000 genomes]
rs7760856	0.97[EUR][1000 genomes]
rs7770311	0.97[EUR][1000 genomes]
rs7770706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771030	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771378	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771574	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774900	0.97[EUR][1000 genomes]
rs9481052	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9487340	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487342	0.95[EUR][1000 genomes]
rs9487343	0.95[EUR][1000 genomes]
rs9487348	0.89[EUR][1000 genomes]
rs9689791	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110609400-110632000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:110610000-110632200	Weak transcription	Pancreas	Pancrea
3	chr6:110616400-110619200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:110616600-110617800	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:110616600-110617800	Enhancers	Fetal Stomach	stomach
6	chr6:110616600-110618600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:110616800-110617800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:110616800-110619200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:110617000-110618000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:110617000-110618200	Enhancers	Fetal Kidney	kidney
11	chr6:110617000-110619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:110617000-110636800	Weak transcription	Aorta	Aorta
13	chr6:110617200-110617800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:110617200-110617800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:110617200-110618000	Enhancers	Colon Smooth Muscle	Colon
16	chr6:110617200-110618200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:110617200-110622400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:110617400-110618200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr6:110617400-110618200	Active TSS	Stomach Smooth Muscle	stomach
20	chr6:110617400-110618200	Active TSS	NHDF-Ad	bronchial
21	chr6:110617400-110621400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:110617600-110617800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:110617600-110617800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr6:110617600-110618000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:110617600-110618000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:110617600-110618000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr6:110617600-110618000	Active TSS	Fetal Lung	lung
28	chr6:110617600-110618000	Bivalent/Poised TSS	Osteobl	bone
29	chr6:110617600-110618200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:110617600-110618200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:110617600-110618200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:110617600-110618200	Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:110617600-110618200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:110617600-110618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:110617600-110618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:110617600-110618200	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:110617600-110618200	Active TSS	NHLF	lung
38	chr6:110617600-110618400	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:110617600-110618400	Enhancers	Fetal Brain Female	brain
40	chr6:110617600-110618400	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:110617600-110618400	Active TSS	Ovary	ovary

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