Variant report

Variant	rs7771378
Chromosome Location	chr6:110605246-110605247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11750973	0.92[EUR][1000 genomes]
rs11753218	0.92[EUR][1000 genomes]
rs11753379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11756892	0.85[EUR][1000 genomes]
rs11757487	0.92[EUR][1000 genomes]
rs17071335	0.92[EUR][1000 genomes]
rs17071340	0.92[EUR][1000 genomes]
rs17071348	0.92[EUR][1000 genomes]
rs17071350	0.92[EUR][1000 genomes]
rs17071361	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071363	0.92[EUR][1000 genomes]
rs17071364	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071372	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071377	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071379	0.97[EUR][1000 genomes]
rs17071380	0.95[EUR][1000 genomes]
rs17071382	0.95[EUR][1000 genomes]
rs17071389	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17071391	0.95[EUR][1000 genomes]
rs17071401	0.95[EUR][1000 genomes]
rs2334320	0.92[EUR][1000 genomes]
rs2334324	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2878175	0.92[EUR][1000 genomes]
rs2878176	0.80[EUR][1000 genomes]
rs4516983	0.92[EUR][1000 genomes]
rs55842731	0.92[EUR][1000 genomes]
rs56241136	0.92[EUR][1000 genomes]
rs57228333	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59987321	0.92[EUR][1000 genomes]
rs6910958	0.95[EUR][1000 genomes]
rs73763003	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73763004	0.92[EUR][1000 genomes]
rs73763005	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73763006	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73765680	0.85[EUR][1000 genomes]
rs73765683	0.90[EUR][1000 genomes]
rs73765685	0.92[EUR][1000 genomes]
rs73765687	0.92[EUR][1000 genomes]
rs73765690	0.92[EUR][1000 genomes]
rs73765691	0.92[EUR][1000 genomes]
rs73765692	0.82[EUR][1000 genomes]
rs7741277	0.92[EUR][1000 genomes]
rs7746806	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754242	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7756496	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7756509	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7758018	0.84[EUR][1000 genomes]
rs7758053	0.92[EUR][1000 genomes]
rs7760856	0.92[EUR][1000 genomes]
rs7770311	0.92[EUR][1000 genomes]
rs7770706	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771030	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771574	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7774900	0.92[EUR][1000 genomes]
rs9481052	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9487342	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487343	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9487348	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110550600-110608200	Weak transcription	Fetal Kidney	kidney
2	chr6:110588400-110607200	Weak transcription	Fetal Stomach	stomach
3	chr6:110599400-110606000	Weak transcription	Fetal Brain Female	brain
4	chr6:110600200-110608400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:110601400-110606800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:110604200-110605400	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:110604600-110605400	Enhancers	Colon Smooth Muscle	Colon
8	chr6:110604600-110605400	Enhancers	Fetal Brain Male	brain
9	chr6:110604600-110607000	Enhancers	Brain Anterior Caudate	brain
10	chr6:110604800-110606800	Enhancers	Brain Angular Gyrus	brain
11	chr6:110604800-110607400	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:110604800-110609000	Weak transcription	Pancreas	Pancrea
13	chr6:110605000-110605400	Enhancers	Stomach Mucosa	stomach
14	chr6:110605000-110605400	Enhancers	HepG2	liver
15	chr6:110605000-110617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:110605200-110605400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:110605200-110605800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:110605200-110606000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:110605200-110606000	Weak transcription	Ovary	ovary
20	chr6:110605200-110607400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:110605200-110607600	Weak transcription	Aorta	Aorta

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