Variant report

Variant	rs7754242
Chromosome Location	chr6:110608885-110608886
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110606982..110609095-chr6:110619308..110622290,2	MCF-7	breast:
2	chr6:110498361..110500396-chr6:110608264..110609928,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11750973	0.97[EUR][1000 genomes]
rs11751592	1.00[CEU][hapmap]
rs11753218	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11753379	0.95[EUR][1000 genomes]
rs11756892	0.90[EUR][1000 genomes]
rs11757487	0.97[EUR][1000 genomes]
rs17071335	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17071340	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17071348	0.97[EUR][1000 genomes]
rs17071350	0.97[EUR][1000 genomes]
rs17071361	0.97[EUR][1000 genomes]
rs17071363	0.97[EUR][1000 genomes]
rs17071364	0.97[EUR][1000 genomes]
rs17071372	0.97[EUR][1000 genomes]
rs17071377	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17071379	0.92[EUR][1000 genomes]
rs17071380	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071382	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071391	1.00[EUR][1000 genomes]
rs17071401	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2334320	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2334324	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2878175	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2878176	0.85[EUR][1000 genomes]
rs4516983	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs55842731	0.97[EUR][1000 genomes]
rs56241136	0.97[EUR][1000 genomes]
rs57228333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59987321	0.97[EUR][1000 genomes]
rs6910958	1.00[EUR][1000 genomes]
rs73763003	0.97[EUR][1000 genomes]
rs73763004	0.97[EUR][1000 genomes]
rs73763005	0.97[EUR][1000 genomes]
rs73763006	0.97[EUR][1000 genomes]
rs73765680	0.90[EUR][1000 genomes]
rs73765683	0.95[EUR][1000 genomes]
rs73765685	0.97[EUR][1000 genomes]
rs73765687	0.97[EUR][1000 genomes]
rs73765690	0.97[EUR][1000 genomes]
rs73765691	0.97[EUR][1000 genomes]
rs73765692	0.86[EUR][1000 genomes]
rs7741277	0.97[EUR][1000 genomes]
rs7746806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7756496	0.97[EUR][1000 genomes]
rs7756509	0.97[EUR][1000 genomes]
rs7758018	0.89[EUR][1000 genomes]
rs7758053	0.97[EUR][1000 genomes]
rs7760856	0.97[EUR][1000 genomes]
rs7770311	0.97[EUR][1000 genomes]
rs7770706	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771378	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774900	0.97[EUR][1000 genomes]
rs9481052	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9487340	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487342	0.95[EUR][1000 genomes]
rs9487343	0.95[EUR][1000 genomes]
rs9487348	0.89[EUR][1000 genomes]
rs9689791	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110604800-110609000	Weak transcription	Pancreas	Pancrea
2	chr6:110605000-110617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:110605400-110617200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:110605800-110609400	Enhancers	Stomach Mucosa	stomach
5	chr6:110606800-110612400	Weak transcription	Ovary	ovary
6	chr6:110607400-110610200	Strong transcription	Stomach Smooth Muscle	stomach
7	chr6:110607600-110609200	Strong transcription	Aorta	Aorta
8	chr6:110608000-110616600	Weak transcription	Fetal Stomach	stomach
9	chr6:110608200-110609600	Enhancers	Fetal Intestine Small	intestine
10	chr6:110608400-110609800	Enhancers	HepG2	liver
11	chr6:110608600-110609000	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:110608600-110609200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:110608600-110609400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:110608600-110609400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr6:110608800-110609200	Enhancers	Brain Anterior Caudate	brain
16	chr6:110608800-110609400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:110608800-110609400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:110608800-110609400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:110608800-110609400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:110608800-110609400	Enhancers	Fetal Kidney	kidney
21	chr6:110608800-110609400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr6:110608800-110609600	Enhancers	Fetal Intestine Large	intestine

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