Variant report

Variant	rs17072764
Chromosome Location	chr6:143864493-143864494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143835971..143837808-chr6:143863905..143866347,2	MCF-7	breast:
2	chr6:143858472..143863143-chr6:143863461..143868967,5	K562	blood:
3	chr6:143859418..143861266-chr6:143863799..143866408,2	K562	blood:
4	chr6:143862944..143867342-chr6:143867503..143870947,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28402075	0.81[AFR][1000 genomes]
rs56154429	1.00[AMR][1000 genomes]
rs58069264	1.00[AMR][1000 genomes]
rs59962405	1.00[AMR][1000 genomes]
rs6920158	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs7356821	0.86[AFR][1000 genomes]
rs7356827	0.86[AFR][1000 genomes]
rs73586262	0.88[AFR][1000 genomes]
rs73780424	1.00[AMR][1000 genomes]
rs73780425	1.00[AMR][1000 genomes]
rs73780429	1.00[AMR][1000 genomes]
rs7742027	0.86[AFR][1000 genomes]
rs9484760	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484765	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9496659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496660	0.86[AFR][1000 genomes]
rs9496661	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9496662	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9496664	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9496665	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9654617	0.91[YRI][hapmap];0.88[AFR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859200-143866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:143859400-143864600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:143859400-143864800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
5	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:143859600-143866200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:143859600-143868600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:143859800-143864600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:143859800-143864600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:143859800-143864800	Weak transcription	Colonic Mucosa	Colon
13	chr6:143860000-143865000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:143860400-143866400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:143860800-143866600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:143861000-143866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:143861000-143866800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:143861000-143866800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:143861400-143866400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:143861400-143866800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:143861600-143864800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:143861600-143865000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:143861600-143866400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:143861600-143866400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr6:143861600-143866600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:143861600-143866600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:143861800-143865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:143861800-143870600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:143862200-143866800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:143862600-143864600	Enhancers	GM12878-XiMat	blood
31	chr6:143862800-143864800	Enhancers	Gastric	stomach
32	chr6:143862800-143867400	Enhancers	Stomach Mucosa	stomach
33	chr6:143863000-143865800	Weak transcription	Primary T cells from cord blood	blood
34	chr6:143863200-143864600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:143863200-143865400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:143863200-143865600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:143863200-143869000	Enhancers	Fetal Intestine Large	intestine
38	chr6:143863200-143870200	Weak transcription	Small Intestine	intestine
39	chr6:143863400-143870200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:143863600-143865200	Enhancers	HepG2	liver
41	chr6:143863600-143866200	Enhancers	Fetal Intestine Small	intestine
42	chr6:143863800-143865000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:143863800-143870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:143864000-143864600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:143864000-143864600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:143864200-143865000	Weak transcription	Right Ventricle	heart
47	chr6:143864200-143865200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:143864200-143866800	Enhancers	Duodenum Mucosa	Duodenum
49	chr6:143864400-143865200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr6:143864400-143865800	Enhancers	Fetal Heart	heart

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