Variant report

Variant	rs9496665
Chromosome Location	chr6:143872597-143872598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143867547..143870073-chr6:143871056..143873406,3	K562	blood:
2	chr6:143821679..143824667-chr6:143871849..143874499,2	K562	blood:
3	chr6:143831248..143834515-chr6:143869865..143874242,4	MCF-7	breast:
4	chr6:143869206..143870977-chr6:143871328..143872933,2	MCF-7	breast:
5	chr6:143870693..143872916-chr6:143883159..143885258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000229036	Chromatin interaction
ENSG00000235740	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17072764	0.86[AFR][1000 genomes]
rs28402075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920158	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6936095	0.80[YRI][hapmap]
rs7356821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586298	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484760	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs9484765	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496659	0.85[AFR][1000 genomes]
rs9496660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496661	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496662	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496664	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9654617	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3473517	chr6:143869036-143872678	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv442011	chr6:143869870-143872600	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:143865000-143875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143865400-143877800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:143865600-143874600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:143865800-143876000	Weak transcription	Fetal Heart	heart
8	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:143867200-143875800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143867400-143875000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:143867400-143876000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:143867600-143876000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:143868200-143883600	Weak transcription	Gastric	stomach
14	chr6:143869800-143873800	Enhancers	Fetal Intestine Large	intestine
15	chr6:143870400-143874600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:143870400-143877000	Enhancers	Fetal Intestine Small	intestine
17	chr6:143870800-143874200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:143871000-143879000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:143871200-143874000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:143871200-143874600	Weak transcription	Primary T cells from cord blood	blood
21	chr6:143871200-143874800	Weak transcription	Fetal Thymus	thymus
22	chr6:143871200-143875600	Weak transcription	Small Intestine	intestine
23	chr6:143871200-143875800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:143871200-143875800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:143871200-143875800	Weak transcription	HMEC	breast
26	chr6:143871200-143876200	Weak transcription	HSMM	muscle
27	chr6:143871400-143872600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:143871400-143873200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:143871400-143874000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:143871400-143874200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:143871400-143875600	Weak transcription	Stomach Mucosa	stomach
32	chr6:143871400-143875800	Weak transcription	NHEK	skin
33	chr6:143871400-143876000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:143871600-143875600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:143871600-143875800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:143871600-143876000	Weak transcription	GM12878-XiMat	blood
37	chr6:143872200-143872600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:143872200-143874600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:143872200-143876000	Enhancers	Primary T helper cells fromperipheralblood	blood

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