Variant report

Variant	rs9496659
Chromosome Location	chr6:143861876-143861877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143832358..143834085-chr6:143860987..143864289,3	MCF-7	breast:
2	chr6:143858472..143863143-chr6:143863461..143868967,5	K562	blood:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction

rs_ID	r²[population]
rs17072764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56154429	1.00[AMR][1000 genomes]
rs58069264	1.00[AMR][1000 genomes]
rs59962405	1.00[AMR][1000 genomes]
rs6920158	0.87[AFR][1000 genomes]
rs7356821	0.85[AFR][1000 genomes]
rs7356827	0.85[AFR][1000 genomes]
rs73586262	0.87[AFR][1000 genomes]
rs73780424	1.00[AMR][1000 genomes]
rs73780425	1.00[AMR][1000 genomes]
rs73780429	1.00[AMR][1000 genomes]
rs7742027	0.85[AFR][1000 genomes]
rs9484760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484765	0.85[AFR][1000 genomes]
rs9496660	0.85[AFR][1000 genomes]
rs9496661	0.85[AFR][1000 genomes]
rs9496662	0.85[AFR][1000 genomes]
rs9496664	0.85[AFR][1000 genomes]
rs9496665	0.85[AFR][1000 genomes]
rs9654617	0.87[AFR][1000 genomes]

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143859200-143863000	Enhancers	Primary T cells from cord blood	blood
2	chr6:143859200-143863000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:143859200-143863800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:143859200-143864000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:143859200-143864000	Weak transcription	NHEK	skin
6	chr6:143859200-143866200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:143859400-143862800	Weak transcription	Gastric	stomach
8	chr6:143859400-143863200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:143859400-143863200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:143859400-143863400	Weak transcription	Right Ventricle	heart
11	chr6:143859400-143863800	Weak transcription	NHLF	lung
12	chr6:143859400-143864000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:143859400-143864000	Weak transcription	HMEC	breast
14	chr6:143859400-143864600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:143859400-143864800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:143859400-143871200	Weak transcription	Pancreas	Pancrea
17	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:143859400-143875600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:143859400-143876000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143859600-143862600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:143859600-143866200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:143859600-143868600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:143859800-143863200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:143859800-143864600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:143859800-143864600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:143859800-143864800	Weak transcription	Colonic Mucosa	Colon
27	chr6:143860000-143862400	Enhancers	Fetal Intestine Large	intestine
28	chr6:143860000-143862800	Weak transcription	Small Intestine	intestine
29	chr6:143860000-143865000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:143860400-143866400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:143860600-143863200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:143860800-143866600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:143861000-143863000	Enhancers	Fetal Intestine Small	intestine
34	chr6:143861000-143866400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:143861000-143866800	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:143861000-143866800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:143861200-143864400	Weak transcription	Fetal Heart	heart
38	chr6:143861400-143862200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:143861400-143866400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr6:143861400-143866800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:143861600-143862600	Weak transcription	GM12878-XiMat	blood
42	chr6:143861600-143862800	Weak transcription	Stomach Mucosa	stomach
43	chr6:143861600-143864200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:143861600-143864200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:143861600-143864800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:143861600-143865000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:143861600-143866400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:143861600-143866400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr6:143861600-143866600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:143861600-143866600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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