Variant report

Variant	rs17079409
Chromosome Location	chr13:66491456-66491457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1460656	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079370	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079376	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079412	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079419	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079434	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079459	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17079466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079596	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195772	0.83[AMR][1000 genomes]
rs56384846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56712091	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57947627	1.00[AMR][1000 genomes]
rs58483798	0.83[AMR][1000 genomes]
rs60637826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61001782	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61453947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506817	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506819	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73506822	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73506823	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73506825	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73506827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73509063	0.83[AMR][1000 genomes]
rs73510914	0.83[AMR][1000 genomes]
rs73510918	0.83[AMR][1000 genomes]
rs73510922	0.83[AMR][1000 genomes]
rs74091825	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74091828	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455917	chr13:65931353-66508344	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562090	chr13:65931353-66508344	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047991	chr13:65982529-66931617	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv832638	chr13:66342397-66498163	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv455921	chr13:66478225-66500873	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv562093	chr13:66478225-66500873	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66489600-66496400	Weak transcription	HSMM	muscle
2	chr13:66489800-66491800	Weak transcription	NHDF-Ad	bronchial
3	chr13:66490000-66496200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:66490400-66495600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:66490600-66492800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:66491200-66493000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:66491400-66492200	Enhancers	Colon Smooth Muscle	Colon

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