Variant report

Variant	rs17081834
Chromosome Location	chr5:178357931-178357932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464050	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11249599	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1475950	0.82[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs17078865	0.83[EUR][1000 genomes]
rs1826862	1.00[CEU][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs2132673	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs56740821	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56773504	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56790802	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56954828	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59485557	0.85[EUR][1000 genomes]
rs59515073	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61213092	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61314110	0.83[EUR][1000 genomes]
rs6867653	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.91[ASN][1000 genomes]
rs6871003	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73334703	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73334721	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73334723	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73334729	0.91[ASN][1000 genomes]
rs73334737	0.85[EUR][1000 genomes]
rs73336533	0.83[EUR][1000 genomes]
rs73336535	0.83[EUR][1000 genomes]
rs9637932	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17081834	DPYD	trans	lymphoblastoid	seeQTL

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178348000-178359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178348000-178360200	ZNF genes & repeats	Left Ventricle	heart
8	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr5:178351600-178359600	ZNF genes & repeats	Aorta	Aorta
10	chr5:178352200-178359200	ZNF genes & repeats	Brain Germinal Matrix	brain
11	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
14	chr5:178352400-178360200	ZNF genes & repeats	Ovary	ovary
15	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:178353400-178360400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
17	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr5:178353600-178361800	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
20	chr5:178353800-178358400	ZNF genes & repeats	Pancreas	Pancrea
21	chr5:178353800-178362200	ZNF genes & repeats	Placenta	Placenta
22	chr5:178353800-178363000	ZNF genes & repeats	Fetal Lung	lung
23	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
24	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
25	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
27	chr5:178354000-178359800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr5:178354800-178360200	ZNF genes & repeats	Right Ventricle	heart
29	chr5:178355000-178359800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:178355000-178359800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr5:178355000-178360400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
32	chr5:178355000-178360400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr5:178355200-178358600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
34	chr5:178355600-178358000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:178355600-178361400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr5:178356200-178359600	ZNF genes & repeats	Fetal Kidney	kidney
37	chr5:178356400-178358800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
38	chr5:178356400-178360400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
39	chr5:178356600-178358800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr5:178356800-178358800	ZNF genes & repeats	Colonic Mucosa	Colon
41	chr5:178356800-178360400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr5:178357000-178359600	ZNF genes & repeats	Fetal Heart	heart
43	chr5:178357400-178358600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
44	chr5:178357600-178361800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:178357600-178361800	ZNF genes & repeats	Psoas Muscle	Psoas
46	chr5:178357800-178359200	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr5:178357800-178360200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr5:178357800-178360400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:178357800-178361600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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