Variant report

Variant	rs56773504
Chromosome Location	chr5:178362262-178362263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178361102..178363466-chr5:178379891..178382466,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10464050	0.83[EUR][1000 genomes]
rs1475950	0.81[EUR][1000 genomes]
rs17078865	0.83[EUR][1000 genomes]
rs17081834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1826862	0.85[EUR][1000 genomes]
rs2132673	0.83[EUR][1000 genomes]
rs56740821	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56790802	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56954828	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59485557	0.85[EUR][1000 genomes]
rs59515073	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61213092	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61314110	0.83[EUR][1000 genomes]
rs6867653	0.88[ASN][1000 genomes]
rs6871003	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73334703	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73334721	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73334723	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73334729	0.88[ASN][1000 genomes]
rs73334737	0.85[EUR][1000 genomes]
rs73336533	0.83[EUR][1000 genomes]
rs73336535	0.83[EUR][1000 genomes]
rs9637932	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
7	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
8	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
9	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr5:178353800-178363000	ZNF genes & repeats	Fetal Lung	lung
14	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
16	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
18	chr5:178360600-178366600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:178360800-178365600	ZNF genes & repeats	Aorta	Aorta
20	chr5:178360800-178365800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
21	chr5:178361600-178365800	ZNF genes & repeats	Left Ventricle	heart
22	chr5:178361800-178364400	ZNF genes & repeats	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links