Variant report

Variant	rs73334737
Chromosome Location	chr5:178387820-178387821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10464050	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1475949	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1475950	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17078865	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17081834	0.85[EUR][1000 genomes]
rs1826862	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132673	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56740821	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56773504	0.85[EUR][1000 genomes]
rs56790802	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56954828	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59485557	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59515073	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60629856	0.81[ASN][1000 genomes]
rs61213092	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61314110	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6867653	0.87[ASN][1000 genomes]
rs6871003	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73334703	0.81[EUR][1000 genomes]
rs73334721	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73334723	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73334729	0.87[ASN][1000 genomes]
rs73336533	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73336535	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9637932	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv525129	chr5:178385585-178390237	ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3471133	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3471134	chr5:178386746-178392344	ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr5:178382400-178389400	Weak transcription	HSMM	muscle
5	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
7	chr5:178383400-178394400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:178384200-178388000	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr5:178384400-178395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:178384600-178388000	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr5:178384800-178388600	Weak transcription	Gastric	stomach
12	chr5:178385200-178388000	ZNF genes & repeats	Liver	Liver
13	chr5:178385600-178388600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:178386200-178388200	ZNF genes & repeats	Left Ventricle	heart
15	chr5:178386400-178388600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:178386400-178388600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
17	chr5:178386400-178388800	Weak transcription	Fetal Kidney	kidney
18	chr5:178386400-178389600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:178386400-178389800	Weak transcription	Right Ventricle	heart
20	chr5:178386600-178388800	ZNF genes & repeats	Fetal Stomach	stomach
21	chr5:178386600-178389000	Weak transcription	Brain Hippocampus Middle	brain
22	chr5:178386800-178388800	Weak transcription	Brain Angular Gyrus	brain
23	chr5:178387000-178388600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr5:178387000-178394200	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr5:178387200-178388200	Strong transcription	Fetal Lung	lung
26	chr5:178387200-178389600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:178387400-178388800	Weak transcription	Brain Substantia Nigra	brain
28	chr5:178387400-178389200	Weak transcription	Ovary	ovary
29	chr5:178387400-178389200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr5:178387600-178389800	Weak transcription	Aorta	Aorta
31	chr5:178387800-178394400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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