Variant report

Variant	rs73334723
Chromosome Location	chr5:178383396-178383397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464050	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1475949	0.80[ASN][1000 genomes]
rs1475950	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17078865	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17081834	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1826862	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132673	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56740821	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56773504	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56790802	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56954828	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59485557	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59515073	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61213092	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61314110	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6867653	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6871003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73334703	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73334721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73334729	0.93[ASN][1000 genomes]
rs73334737	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73336533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73336535	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9637932	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
2	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:178375600-178385800	Weak transcription	Osteobl	bone
5	chr5:178376800-178383400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr5:178376800-178383600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr5:178377000-178383600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:178378000-178383400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
10	chr5:178379800-178383400	ZNF genes & repeats	Fetal Lung	lung
11	chr5:178380000-178383800	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr5:178380200-178383400	ZNF genes & repeats	Brain Germinal Matrix	brain
14	chr5:178380400-178383600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
15	chr5:178380600-178383400	Weak transcription	Fetal Intestine Large	intestine
16	chr5:178380800-178384800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:178381000-178383600	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr5:178381000-178384800	ZNF genes & repeats	Aorta	Aorta
19	chr5:178381400-178383400	ZNF genes & repeats	Fetal Kidney	kidney
20	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr5:178381600-178383400	ZNF genes & repeats	Colon Smooth Muscle	Colon
22	chr5:178381600-178383600	ZNF genes & repeats	Right Ventricle	heart
23	chr5:178381600-178384800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:178381600-178385400	ZNF genes & repeats	Left Ventricle	heart
25	chr5:178381600-178386600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:178382400-178384200	Weak transcription	Fetal Heart	heart
27	chr5:178382400-178384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:178382400-178386000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:178382400-178389400	Weak transcription	HSMM	muscle
30	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:178383000-178384600	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:178383000-178384600	Weak transcription	Gastric	stomach
33	chr5:178383000-178385200	Weak transcription	Brain Anterior Caudate	brain
34	chr5:178383000-178385200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr5:178383000-178385400	Weak transcription	Fetal Brain Male	brain
36	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
37	chr5:178383200-178384600	Weak transcription	Stomach Smooth Muscle	stomach

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