Variant report

Variant	rs17084882
Chromosome Location	chr5:94886354-94886355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94885448..94888187-chr5:94888844..94890737,5	K562	blood:
2	chr5:94869385..94872836-chr5:94884055..94887302,3	K562	blood:
3	chr5:94775142..94778090-chr5:94885546..94887301,2	K562	blood:
4	chr5:94885887..94888055-chr5:94890822..94893309,3	K562	blood:

Variant related genes	Relation type
ENSG00000198677	Chromatin interaction
ENSG00000164291	Chromatin interaction
ENSG00000225165	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17084739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084919	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711684	1.00[AMR][1000 genomes]
rs7728336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
11	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
12	chr5:94869400-94889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:94870200-94889000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:94871400-94886400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:94876200-94888800	Strong transcription	NHLF	lung
16	chr5:94877600-94889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:94878400-94889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:94879600-94886400	Strong transcription	HSMM	muscle
19	chr5:94879600-94886600	Strong transcription	Osteobl	bone
20	chr5:94879600-94889600	Weak transcription	Fetal Intestine Small	intestine
21	chr5:94879800-94886800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:94880000-94887600	Weak transcription	Small Intestine	intestine
23	chr5:94881000-94889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr5:94881400-94889400	Weak transcription	Brain Substantia Nigra	brain
25	chr5:94881400-94889600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:94881600-94887200	Weak transcription	Fetal Heart	heart
27	chr5:94881600-94889200	Weak transcription	Fetal Brain Male	brain
28	chr5:94881600-94889600	Weak transcription	Thymus	Thymus
29	chr5:94881800-94887600	Weak transcription	NHEK	skin
30	chr5:94881800-94888200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:94881800-94889400	Weak transcription	Colonic Mucosa	Colon
32	chr5:94881800-94889400	Weak transcription	Spleen	Spleen
33	chr5:94882000-94888200	Weak transcription	Brain Germinal Matrix	brain
34	chr5:94882200-94888600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr5:94882400-94887200	Weak transcription	Psoas Muscle	Psoas
36	chr5:94882400-94889400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:94882400-94889400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr5:94882400-94889400	Weak transcription	Lung	lung
39	chr5:94882400-94889400	Weak transcription	Pancreas	Pancrea
40	chr5:94882400-94889400	Weak transcription	Right Ventricle	heart
41	chr5:94882400-94889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:94882400-94889600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:94882400-94889600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr5:94882400-94889600	Weak transcription	Fetal Stomach	stomach
45	chr5:94882800-94887200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:94883000-94887000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:94883000-94887000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:94883000-94887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:94883000-94887200	Weak transcription	Primary T cells from cord blood	blood
50	chr5:94883000-94887200	Weak transcription	Brain Angular Gyrus	brain

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