Variant report

Variant	rs7728336
Chromosome Location	chr5:94950379-94950380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17084739	1.00[AMR][1000 genomes]
rs17084805	1.00[AMR][1000 genomes]
rs17084830	1.00[AMR][1000 genomes]
rs17084882	1.00[AMR][1000 genomes]
rs17084919	1.00[AMR][1000 genomes]
rs61733082	1.00[AMR][1000 genomes]
rs7711684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94937600-94952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:94938000-94952400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:94938200-94954400	Weak transcription	Primary T cells from cord blood	blood
9	chr5:94947800-94950800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:94949000-94955000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:94949200-94950800	Weak transcription	Aorta	Aorta
12	chr5:94949200-94952800	Weak transcription	Pancreas	Pancrea
13	chr5:94949600-94951400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:94949800-94950600	Weak transcription	Dnd41	blood
15	chr5:94949800-94952600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:94949800-94955000	Weak transcription	Primary B cells from cord blood	blood
17	chr5:94950200-94950800	Enhancers	GM12878-XiMat	blood
18	chr5:94950200-94951000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:94950200-94953000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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