Variant report

Variant	rs17084739
Chromosome Location	chr5:94784892-94784893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17084805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711684	1.00[AMR][1000 genomes]
rs7728336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94777000-94798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:94780400-94810800	Weak transcription	Pancreas	Pancrea
3	chr5:94782000-94810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:94782600-94800000	Weak transcription	HMEC	breast
5	chr5:94783200-94796000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:94783400-94795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:94783400-94795800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:94783400-94798600	Weak transcription	Gastric	stomach
9	chr5:94783400-94798600	Weak transcription	Left Ventricle	heart
10	chr5:94783600-94797200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:94783600-94798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:94784200-94785600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:94784400-94785000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:94784400-94785000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:94784400-94785200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:94784600-94785600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:94784800-94785200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:94784800-94785200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:94784800-94785400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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