Variant report

Variant	rs17084919
Chromosome Location	chr5:94932807-94932808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94931680..94933304-chr5:94933656..94936411,2	K562	blood:
2	chr5:94924450..94926952-chr5:94932627..94934367,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17084739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17084882	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895068	1.00[MEX][hapmap]
rs7711684	1.00[AMR][1000 genomes]
rs7728336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
2	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
3	chr5:94892400-94937200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:94900400-94942400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:94902000-94936600	Weak transcription	HSMMtube	muscle
6	chr5:94904600-94936600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:94904600-94939400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:94905000-94936600	Weak transcription	Fetal Intestine Large	intestine
9	chr5:94905000-94936600	Weak transcription	Ovary	ovary
10	chr5:94905000-94936800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:94905000-94936800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:94905000-94939200	Weak transcription	Aorta	Aorta
13	chr5:94905000-94940600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:94906400-94936800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:94909800-94935800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:94912800-94943400	Weak transcription	Fetal Intestine Small	intestine
17	chr5:94915000-94939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:94917400-94940800	Weak transcription	Fetal Brain Male	brain
19	chr5:94920600-94935800	Weak transcription	Primary B cells from cord blood	blood
20	chr5:94925600-94936600	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:94926000-94936600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:94926200-94937400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:94926400-94941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:94926600-94936200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:94926800-94938600	Weak transcription	K562	blood
26	chr5:94926800-94942000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:94927000-94936600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr5:94927000-94936600	Weak transcription	Fetal Thymus	thymus
29	chr5:94927000-94936800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:94927000-94940800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:94927200-94936600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:94927400-94934600	Weak transcription	Primary T cells from cord blood	blood
36	chr5:94927400-94936800	Weak transcription	Dnd41	blood
37	chr5:94927400-94938400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:94927600-94936800	Weak transcription	HSMM	muscle
39	chr5:94927600-94937600	Weak transcription	Left Ventricle	heart
40	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:94927800-94936600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:94927800-94936600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:94927800-94936800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr5:94927800-94941200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:94928200-94936200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:94928200-94938400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr5:94928400-94936600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr5:94928400-94938200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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