Variant report

Variant	rs17086243
Chromosome Location	chr9:86031564-86031565
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17086262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17086263	1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3860920	1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs3860922	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs3860923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60581387	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72745063	0.95[ASN][1000 genomes]
rs72745065	0.91[ASN][1000 genomes]
rs72745066	0.95[ASN][1000 genomes]
rs72745070	0.95[ASN][1000 genomes]
rs72745075	0.95[ASN][1000 genomes]
rs72745077	0.95[ASN][1000 genomes]
rs72745079	0.95[ASN][1000 genomes]
rs72745085	0.92[ASN][1000 genomes]
rs72745088	0.92[ASN][1000 genomes]
rs72745094	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
2	chr9:86017400-86034400	Weak transcription	Psoas Muscle	Psoas
3	chr9:86019400-86037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
5	chr9:86023200-86035000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:86026600-86035000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:86029600-86038200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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