Variant report

Variant	rs72745085
Chromosome Location	chr9:86050366-86050367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17086243	0.92[ASN][1000 genomes]
rs17086262	0.97[ASN][1000 genomes]
rs17086263	0.97[ASN][1000 genomes]
rs3860920	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3860923	0.97[ASN][1000 genomes]
rs55723059	0.86[AFR][1000 genomes]
rs60581387	1.00[ASN][1000 genomes]
rs72745063	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745065	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72745066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745068	0.86[AFR][1000 genomes]
rs72745070	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745094	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72745098	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72745100	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86046600-86050800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:86047200-86052200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr9:86047400-86050400	Enhancers	HepG2	liver
4	chr9:86047400-86052600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
7	chr9:86047600-86051200	Weak transcription	Fetal Heart	heart
8	chr9:86047600-86052400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:86047600-86053800	Weak transcription	Aorta	Aorta
10	chr9:86047600-86055800	Weak transcription	Esophagus	oesophagus
11	chr9:86047600-86055800	Weak transcription	Ovary	ovary
12	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:86048000-86050600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr9:86048200-86056400	Weak transcription	A549	lung
16	chr9:86048600-86051200	Enhancers	Left Ventricle	heart
17	chr9:86048800-86052000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr9:86049400-86050400	Weak transcription	Psoas Muscle	Psoas
19	chr9:86049400-86050800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:86049400-86055200	Weak transcription	Gastric	stomach
21	chr9:86049400-86055200	Weak transcription	Spleen	Spleen
22	chr9:86049400-86055600	Weak transcription	Right Atrium	heart
23	chr9:86049600-86050800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:86050000-86055200	Weak transcription	Right Ventricle	heart
25	chr9:86050200-86050400	Enhancers	Pancreas	Pancrea
26	chr9:86050200-86050400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links