Variant report

Variant	rs72745098
Chromosome Location	chr9:86061202-86061203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17086262	0.83[ASN][1000 genomes]
rs17086263	0.83[ASN][1000 genomes]
rs3860920	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3860922	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3860923	0.83[ASN][1000 genomes]
rs60581387	0.86[ASN][1000 genomes]
rs72745063	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745065	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72745066	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745070	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745075	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745077	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745079	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745085	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72745088	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72745094	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:86056200-86062200	Weak transcription	Spleen	Spleen
5	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
6	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:86057000-86063600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:86057000-86066400	Weak transcription	A549	lung
9	chr9:86059200-86062000	Weak transcription	Psoas Muscle	Psoas
10	chr9:86059600-86063200	Weak transcription	Placenta	Placenta
11	chr9:86059600-86063200	Weak transcription	Fetal Stomach	stomach
12	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
13	chr9:86059800-86062200	Weak transcription	Left Ventricle	heart
14	chr9:86059800-86062400	Weak transcription	Ovary	ovary
15	chr9:86059800-86063800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:86060200-86063400	Weak transcription	Fetal Muscle Leg	muscle
17	chr9:86060800-86063600	Weak transcription	Fetal Kidney	kidney
18	chr9:86061200-86063200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:86061200-86081400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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