Variant report

Variant	rs72745075
Chromosome Location	chr9:86047319-86047320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86045543..86047511-chr9:86062619..86064900,2	MCF-7	breast:
2	chr9:86046084..86048921-chr9:86138267..86141242,2	MCF-7	breast:
3	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17086243	0.95[ASN][1000 genomes]
rs17086262	1.00[ASN][1000 genomes]
rs17086263	1.00[ASN][1000 genomes]
rs3860920	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860923	1.00[ASN][1000 genomes]
rs55723059	0.86[AFR][1000 genomes]
rs60581387	0.97[ASN][1000 genomes]
rs72745063	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745065	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745068	0.86[AFR][1000 genomes]
rs72745070	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745094	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72745098	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745100	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86040400-86050000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:86044000-86047600	Enhancers	Pancreas	Pancrea
4	chr9:86044400-86047600	Enhancers	Left Ventricle	heart
5	chr9:86045000-86047600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:86045600-86047400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:86045600-86047600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:86045600-86047600	Enhancers	Aorta	Aorta
9	chr9:86045600-86047600	Enhancers	Colon Smooth Muscle	Colon
10	chr9:86045600-86047600	Enhancers	Ovary	ovary
11	chr9:86045600-86047600	Enhancers	Right Atrium	heart
12	chr9:86045600-86048200	Enhancers	Liver	Liver
13	chr9:86045800-86047400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:86045800-86047400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:86045800-86047400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:86045800-86047400	Enhancers	Fetal Lung	lung
17	chr9:86045800-86047400	Enhancers	HSMMtube	muscle
18	chr9:86045800-86047600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:86045800-86047600	Enhancers	Psoas Muscle	Psoas
20	chr9:86045800-86047600	Enhancers	Spleen	Spleen
21	chr9:86045800-86048000	Enhancers	NHDF-Ad	bronchial
22	chr9:86045800-86048200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:86046000-86047400	Enhancers	Right Ventricle	heart
24	chr9:86046000-86047400	Enhancers	HSMM	muscle
25	chr9:86046000-86047600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:86046000-86047600	Enhancers	Fetal Heart	heart
27	chr9:86046200-86047400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr9:86046200-86048600	Weak transcription	Gastric	stomach
29	chr9:86046400-86047600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:86046400-86047600	Enhancers	Small Intestine	intestine
31	chr9:86046600-86047400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr9:86046600-86047400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:86046600-86047400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:86046600-86047400	Enhancers	Fetal Intestine Small	intestine
35	chr9:86046600-86047400	Enhancers	Stomach Mucosa	stomach
36	chr9:86046600-86047400	Flanking Active TSS	A549	lung
37	chr9:86046600-86047600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:86046600-86047600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:86046600-86047600	Enhancers	Fetal Muscle Trunk	muscle
40	chr9:86046600-86047600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr9:86046600-86047600	Flanking Active TSS	Hela-S3	cervix
42	chr9:86046600-86047600	Enhancers	HUVEC	blood vessel
43	chr9:86046600-86047600	Enhancers	NH-A	brain
44	chr9:86046600-86048000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr9:86046600-86050800	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:86046800-86047400	Enhancers	H1 Cell Line	embryonic stem cell
47	chr9:86046800-86047400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:86046800-86047400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr9:86046800-86047400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr9:86046800-86047400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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