Variant report

Variant	rs55723059
Chromosome Location	chr9:86056824-86056825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10481759	0.83[EUR][1000 genomes]
rs11140084	0.86[EUR][1000 genomes]
rs12343136	0.86[EUR][1000 genomes]
rs17318424	0.86[EUR][1000 genomes]
rs17318708	0.86[EUR][1000 genomes]
rs17403376	0.86[EUR][1000 genomes]
rs17403571	0.86[EUR][1000 genomes]
rs17403697	0.86[EUR][1000 genomes]
rs17404131	0.89[EUR][1000 genomes]
rs17404249	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3860920	0.86[AFR][1000 genomes]
rs4612446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56187856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018958	0.86[EUR][1000 genomes]
rs7023423	0.86[EUR][1000 genomes]
rs7029023	0.89[EUR][1000 genomes]
rs7029634	0.86[EUR][1000 genomes]
rs7034364	0.86[EUR][1000 genomes]
rs72745040	0.86[EUR][1000 genomes]
rs72745041	0.86[EUR][1000 genomes]
rs72745045	0.86[EUR][1000 genomes]
rs72745054	0.89[EUR][1000 genomes]
rs72745061	0.89[EUR][1000 genomes]
rs72745063	0.86[AFR][1000 genomes]
rs72745065	0.86[AFR][1000 genomes]
rs72745068	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72745070	0.86[AFR][1000 genomes]
rs72745072	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72745075	0.86[AFR][1000 genomes]
rs72745077	0.86[AFR][1000 genomes]
rs72745079	0.86[AFR][1000 genomes]
rs72745085	0.86[AFR][1000 genomes]
rs72745086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72745088	0.86[AFR][1000 genomes]
rs72745100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72745101	0.93[EUR][1000 genomes]
rs72745102	0.93[EUR][1000 genomes]
rs72746804	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72746808	0.93[EUR][1000 genomes]
rs72746809	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
2	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:86055400-86057000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:86055800-86057000	Enhancers	Adipose Nuclei	Adipose
7	chr9:86055800-86057200	Enhancers	Ovary	ovary
8	chr9:86055800-86059000	Weak transcription	Psoas Muscle	Psoas
9	chr9:86056000-86059000	Weak transcription	Gastric	stomach
10	chr9:86056000-86059000	Weak transcription	Right Atrium	heart
11	chr9:86056000-86059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:86056200-86062200	Weak transcription	Spleen	Spleen
14	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
15	chr9:86056400-86057000	Enhancers	A549	lung
16	chr9:86056400-86057000	Enhancers	Hela-S3	cervix
17	chr9:86056600-86057000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:86056600-86057000	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:86056800-86058800	Weak transcription	NHDF-Ad	bronchial
20	chr9:86056800-86059000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:86056800-86059000	Weak transcription	Aorta	Aorta
22	chr9:86056800-86059000	Weak transcription	Fetal Stomach	stomach
23	chr9:86056800-86059000	Weak transcription	Left Ventricle	heart
24	chr9:86056800-86059000	Weak transcription	Pancreas	Pancrea
25	chr9:86056800-86059000	Weak transcription	Right Ventricle	heart
26	chr9:86056800-86059200	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:86056800-86060600	Weak transcription	Fetal Kidney	kidney
28	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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