Variant report

Variant	rs4612446
Chromosome Location	chr9:86068923-86068924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17318708	0.85[AMR][1000 genomes]
rs17403376	0.85[AMR][1000 genomes]
rs17403697	0.85[AMR][1000 genomes]
rs17404131	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17404249	0.89[EUR][1000 genomes]
rs55723059	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56187856	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7023423	0.85[AMR][1000 genomes]
rs7029023	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72745045	0.85[AMR][1000 genomes]
rs72745054	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72745061	0.83[EUR][1000 genomes]
rs72745068	0.89[EUR][1000 genomes]
rs72745072	0.89[EUR][1000 genomes]
rs72745086	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72745100	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72745101	1.00[EUR][1000 genomes]
rs72745102	1.00[EUR][1000 genomes]
rs72746804	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72746808	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72746809	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
3	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
4	chr9:86061200-86081400	Weak transcription	HepG2	liver
5	chr9:86065000-86071200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:86065800-86073200	Weak transcription	Spleen	Spleen
7	chr9:86065800-86078800	Weak transcription	Left Ventricle	heart
8	chr9:86066600-86074200	Weak transcription	Pancreas	Pancrea
9	chr9:86066800-86071400	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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