Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10481759	0.83[EUR][1000 genomes]
rs11140084	0.86[EUR][1000 genomes]
rs12343136	0.86[EUR][1000 genomes]
rs17318424	0.86[EUR][1000 genomes]
rs17318708	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17403376	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17403571	0.86[EUR][1000 genomes]
rs17403697	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17404131	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17404249	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4612446	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55723059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018958	0.86[EUR][1000 genomes]
rs7023423	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7029023	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7029634	0.86[EUR][1000 genomes]
rs7034364	0.86[EUR][1000 genomes]
rs72745040	0.86[EUR][1000 genomes]
rs72745041	0.86[EUR][1000 genomes]
rs72745045	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72745054	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72745061	0.89[EUR][1000 genomes]
rs72745068	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72745072	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72745100	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72745101	0.93[EUR][1000 genomes]
rs72745102	0.93[EUR][1000 genomes]
rs72746804	0.93[EUR][1000 genomes]
rs72746808	0.93[EUR][1000 genomes]
rs72746809	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047200-86052200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:86047400-86052600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
5	chr9:86047600-86052400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:86047600-86053800	Weak transcription	Aorta	Aorta
7	chr9:86047600-86055800	Weak transcription	Esophagus	oesophagus
8	chr9:86047600-86055800	Weak transcription	Ovary	ovary
9	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:86048200-86056400	Weak transcription	A549	lung
12	chr9:86049400-86055200	Weak transcription	Gastric	stomach
13	chr9:86049400-86055200	Weak transcription	Spleen	Spleen
14	chr9:86049400-86055600	Weak transcription	Right Atrium	heart
15	chr9:86050000-86055200	Weak transcription	Right Ventricle	heart
16	chr9:86050400-86055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:86051200-86054400	Weak transcription	Pancreas	Pancrea
18	chr9:86051200-86055400	Weak transcription	Left Ventricle	heart
19	chr9:86051200-86055600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:86051600-86055200	Weak transcription	Fetal Heart	heart
21	chr9:86051800-86055400	Weak transcription	Psoas Muscle	Psoas

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