Variant report

Variant	rs72745054
Chromosome Location	chr9:86035593-86035594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10481759	0.93[EUR][1000 genomes]
rs11140084	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343136	0.96[EUR][1000 genomes]
rs17318424	0.96[EUR][1000 genomes]
rs17318708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403571	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17404131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17404249	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4612446	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55723059	0.89[EUR][1000 genomes]
rs56187856	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7018958	0.96[EUR][1000 genomes]
rs7023423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7029023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7029634	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7034364	0.96[EUR][1000 genomes]
rs72745040	0.96[EUR][1000 genomes]
rs72745041	0.96[EUR][1000 genomes]
rs72745045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72745061	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72745068	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72745072	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72745086	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72745100	0.86[EUR][1000 genomes]
rs72745101	0.83[EUR][1000 genomes]
rs72745102	0.83[EUR][1000 genomes]
rs72746804	0.83[EUR][1000 genomes]
rs72746808	0.83[EUR][1000 genomes]
rs72746809	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
2	chr9:86019400-86037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
4	chr9:86029600-86038200	Weak transcription	Pancreas	Pancrea
5	chr9:86034200-86036400	Enhancers	Fetal Brain Male	brain
6	chr9:86034600-86037200	Weak transcription	HepG2	liver
7	chr9:86034600-86038200	Weak transcription	Left Ventricle	heart
8	chr9:86034600-86038600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:86034600-86039000	Weak transcription	Right Atrium	heart
10	chr9:86035000-86035600	Enhancers	Fetal Brain Female	brain
11	chr9:86035000-86035600	Enhancers	Fetal Muscle Leg	muscle
12	chr9:86035000-86035800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:86035400-86035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:86035400-86037400	Weak transcription	Fetal Lung	lung
15	chr9:86035400-86037600	Weak transcription	HSMMtube	muscle
16	chr9:86035400-86041400	Weak transcription	Psoas Muscle	Psoas

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