Variant report

Variant	rs72745077
Chromosome Location	chr9:86047493-86047494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86045543..86047511-chr9:86062619..86064900,2	MCF-7	breast:
2	chr9:86046084..86048921-chr9:86138267..86141242,2	MCF-7	breast:
3	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17086243	0.95[ASN][1000 genomes]
rs17086262	1.00[ASN][1000 genomes]
rs17086263	1.00[ASN][1000 genomes]
rs3860920	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860923	1.00[ASN][1000 genomes]
rs55723059	0.86[AFR][1000 genomes]
rs60581387	0.97[ASN][1000 genomes]
rs72745063	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745065	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745068	0.86[AFR][1000 genomes]
rs72745070	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745094	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72745098	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745100	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86040400-86050000	Weak transcription	Fetal Intestine Large	intestine
3	chr9:86044000-86047600	Enhancers	Pancreas	Pancrea
4	chr9:86044400-86047600	Enhancers	Left Ventricle	heart
5	chr9:86045000-86047600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:86045600-86047600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:86045600-86047600	Enhancers	Aorta	Aorta
8	chr9:86045600-86047600	Enhancers	Colon Smooth Muscle	Colon
9	chr9:86045600-86047600	Enhancers	Ovary	ovary
10	chr9:86045600-86047600	Enhancers	Right Atrium	heart
11	chr9:86045600-86048200	Enhancers	Liver	Liver
12	chr9:86045800-86047600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:86045800-86047600	Enhancers	Psoas Muscle	Psoas
14	chr9:86045800-86047600	Enhancers	Spleen	Spleen
15	chr9:86045800-86048000	Enhancers	NHDF-Ad	bronchial
16	chr9:86045800-86048200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:86046000-86047600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:86046000-86047600	Enhancers	Fetal Heart	heart
19	chr9:86046200-86048600	Weak transcription	Gastric	stomach
20	chr9:86046400-86047600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:86046400-86047600	Enhancers	Small Intestine	intestine
22	chr9:86046600-86047600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:86046600-86047600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:86046600-86047600	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:86046600-86047600	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr9:86046600-86047600	Flanking Active TSS	Hela-S3	cervix
27	chr9:86046600-86047600	Enhancers	HUVEC	blood vessel
28	chr9:86046600-86047600	Enhancers	NH-A	brain
29	chr9:86046600-86048000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr9:86046600-86050800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr9:86046800-86047600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr9:86046800-86047600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:86046800-86047600	Enhancers	Brain Substantia Nigra	brain
34	chr9:86046800-86047600	Enhancers	Esophagus	oesophagus
35	chr9:86046800-86047600	Enhancers	Lung	lung
36	chr9:86046800-86048000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr9:86047000-86047600	Enhancers	Brain Angular Gyrus	brain
38	chr9:86047000-86047600	Enhancers	Colonic Mucosa	Colon
39	chr9:86047200-86052200	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr9:86047400-86047600	Enhancers	Adipose Nuclei	Adipose
41	chr9:86047400-86047600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:86047400-86047800	Enhancers	A549	lung
43	chr9:86047400-86048600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr9:86047400-86049200	Weak transcription	Right Ventricle	heart
45	chr9:86047400-86049200	Weak transcription	Stomach Mucosa	stomach
46	chr9:86047400-86050400	Enhancers	HepG2	liver
47	chr9:86047400-86052600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr9:86047400-86059000	Weak transcription	Placenta	Placenta

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