Variant report
| Variant | rs17094648 |
|---|---|
| Chromosome Location | chr14:97406609-97406610 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:60)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LINC00618 | TF binding region |
| ENSG00000225163 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10147597 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10150685 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10150869 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17094640 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17094645 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17094651 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17094663 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17094665 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17094678 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17094682 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17094734 | 0.89[AMR][1000 genomes] |
| rs17094747 | 0.89[AMR][1000 genomes] |
| rs28363869 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs57672244 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58881967 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59373873 | 0.89[AMR][1000 genomes] |
| rs60006953 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs746127 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8015032 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs856252 | 0.95[ASN][1000 genomes] |
| rs856256 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044202 | chr14:97155291-97683983 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv542179 | chr14:97155291-97683983 | Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv948620 | chr14:97334444-98133191 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv832867 | chr14:97365919-97541763 | Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:97379400-97411800 | Weak transcription | Primary T cells from cord blood | blood |
| 2 | chr14:97398000-97412800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr14:97399200-97409600 | Weak transcription | Dnd41 | blood |
| 4 | chr14:97404600-97410400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
